153.

H. L. Tran, K. W. Lexa, O. Julien, T. S. Young, C. T. Walsh, M. P. Jacobson, and J. A. Wells.  “Structure-Activity Relationship and Molecular Mechanics Reveal the Importance of Ring Entropy in the Biosynthesis and Activity of a Natural Product.”  JACS, 139 (2017) 2541-2544.  Pubmed

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151.

M. Armstrong, C. van Hoorebeke, T. Horn, J. Deschamps, J. C. Freedman, C. Kalyanaraman, M. P. Jacobson, and T. Holman.  “Human 15-LOX-1 active site mutations alter inhibitor binding and decrease potency”, Bioorg. Med. Chem., 24 (2016) 5380-5387.  PMC5065787

150.

X. Y. He, Y. J. Li, C. Kalyanaraman, L. L. Qiu, C. Chen, Q. Xiao, W. X. Liu, W. Zhang, J. J. Yang, G. Chen, M. P. Jacobson, and Y. S. Shi.  “GluA1 signal peptide determines the spatial assembly of heteromeric AMPA receptors”, PNAS, 113 (2016) E5645-E5654.  PMC5035880

145.

X. Zhang, M. S. Carter, M. W. Vetting, B. San Francisco, S. Zhao, N. F. Al-Obaidi, J. O. Solbiati, J. J. Thiaville, V. de Crécy-Lagard, M. P. Jacobson, S. C. Almo, and J. A. Gerlt. “Assignment of function to a domain of unknown function: DUF1537 is a new kinase family in catabolic pathways for acid sugars”, PNAS, 113 (2016) E4161-4169. PMC4961189

142.

T. Long, R. J. Neitz, R. Beasley, C. Kalyanaraman, B. M. Suzuki, M. P. Jacobson, C. Dissous, J. H. McKerrow, D. H. Drewry, W. J. Zuercher, R. Singh, and C. R. Caffrey.  “Structure-Bioactivity Relationship for Benzimidazole Thiophene Inhibitors of Polo-Like Kinase 1 (PLK1), a Potential Drug Target in Schistosoma mansoni”,  PLoS Negl. Trop. Dis., 10 (2016) e0004356.  Open Access

140.

J. Schwochert, R. Turner, M. Thang, R. Berkeley, A. Ponkey, K. M. Rodriguez, S. S. S. Leung, B. Khunte, C. Limberakis, A. S. Kalgutkar, H. Eng, M. J. Shapiro, A. M. Mathiowetz, D. A. Price, S. Liras, M. P. Jacobson, and R. S. Lokey.  “Peptide to peptoid substitutions increase cellular permeability in cyclic hexapeptides”, Org. Lett., 17 (2015) 2928-2931.  Pubmed

139.

A. T. Bockus, K. Lexa, C. Pye, A. Kalgutkar, J. Garden, K. Hund, W. M. Hewitt, J. Schwochert, E. Glassey, D. A. Price, A. M. Mathiowetz, S. Liras, M. P. Jacobson, and R. S. Lokey.  “Probing the Physicochemical Boundaries of Cell Permeability and Oral Bioavailability in Lipophilic Macrocycles Inspired by Natural Products”, J. Med. Chem., 58 (2015) 4581-4589.  Pubmed

135.

M. W. Vetting, N. Al-Obadi, S. Zhao, B. San Francisco, J. Kin, D. W. Wichelecki, J. Bouvier, J. O. Solbiati, H. Vu, X. Zhang, D. Rodionov, J. D. Love, B. S. Hillerich, R. D. Seidel, R. J. Quinn, A. L. Osterman, J. E. Cronan, M. P. Jacobson, J. A. Gerlt, S. C. Almo.   “Experimental Strategies for Functional Annotation and Metabolism Discovery: Targeted Screening of Solute Binding Proteins and Unbiased Panning of Metabolomes”.  Biochemistry, 54 (2015) 909-931.  PMC4310620  C&ENews

133.

M. C. Chimenti, S. L. Bulfer, R. J. Neitz, A. R. Renslo, M. P. Jacobson, T. L. James, M. R. Arkin, and M. J. S. Kelly.  “A Fragment-Based Ligand Screen Against Part of a Large Protein Machine; the ND1 Domains of the AAA+ ATPase p97/VCP”, J. Biomolecular Screening, 20 (2015) 788-800.  Pubmed

130.

S. Hasnain, C. L. McClendon, M. T. Hsu, M. P. Jacobson, P. Bandyopadhyay.  “A new coarse-grained model for E. coli cytoplasm: accurate calculation of the diffusion coefficient of proteins and observation of anomalous diffusion”, PLoS One, 9 (2014) e0106466.  PMC4152264

128.

J. B. Jameson, A. Kantz, L. Schultz, C. Kalyanaraman, M. P. Jacobson, D. J. Maloney, A. Jadhav, A. Simeonov, and T. R. Holman.  “A high throughput screen identifies potent and selective inhibitors to human epithelial 15-lipoxygenase-2”.  PLoS One, 9 (2014) e104094.  PMC4128814

126.

F. P. Groninger-Poe, J. T. Bouvier, M. W. Vetting, C. Kalyanaraman, R. Kumar, S. C. Almo, M. P. Jacobson, and J. A. Gerlt.  “Evolution of Enzymatic Activities in the Enolase Superfamily:  Galactarate Dehydratase-III from Agrobacterium tumefaciens C58”, Biochemistry 53 (2014) 4192-4203.  Online PMC4081050

125.

S. Zhao, A. Sakai, X. Zhang, M. Vetting, R. Kumar, B. Hillerich, B. San Francisco, J. Solbiati, A. Steeves, S. Brown, E. Akiva, A. Barber, R. Seidel, J. E. Cronan, P. C. Babbitt, S. C. Almo, J. A. Gerlt, and M. P. Jacobson.  “Prediction and characterization of enzymatic activities guided by sequence similarity and genome neighborhood networks”, eLife (2014) e03275.  Online  PMC4113996

122.

R. Kumar, S. Zhao, M. W. Vetting, B. M. Wood, A. Sakai, K. Cho, S. C. Almo, J. V. Sweedler, M. P. Jacobson, J. A. Gerlt, and J. E. Cronan.  “Prediction and Biochemical Demonstration of a Catabolic Pathway for the Osmoprotectant Proline Betaine”, mBio, 11 (2014) e00933-13.  PMC3950512

120.

L. X. Peng*, M. T. Hsu*, M. Bonomi, D. A. Agard, and M. P. Jacobson.  “The free energy profile of tubulin straight-bent conformational changes, with implications for microtubule assembly and drug discovery”, PLoS Computational Biology, 10 (2014) e1003464.  (* Joint first authors)  Open Access  PMC3916224

119.

S. Hasnain, M. P. Jacobson, and P. Bandyopadhyay.  “A comparative Brownian dynamics investigation between small linear and circular DNA: Scaling of diffusion coefficient with size and topology of DNA”, Chemical Physics Letters, 591 (2014) 253-258.  Online

118.

M. J. Rardin, W. He, Y. Nishida, J. C. Newman, C. Carrico, S. R. Danielson, A. Guo, P. Gut, A. K. Sahu, B. Li, R. Uppala, M. Fitch, T. Riiff, L. Zhu, J. Zhou, D. Mulhern, R. D. Stevens, O. R. Ilkayeva, C. B. Newgard, M. P. Jacobson, M. Hellerstein, E. S. Goetzman, B. W. Gibson, E. Verdin.  “SIRT5 regulates the mitochondrial lysine succinylome and metabolic networks”, Cell Metabolism, 18 (2013) 920-933.  Online  PMC4105152

117.

M. Ndao, M. Nath-Chowdhury, M. Sajid, V. Marcus, S. T. Mashiyama, J. Sakanari, E. Chow, Z. Mackey, K. M. Land, M. P. Jacobson, C. Kalyanaraman, J. H. McKerrow, M. J. Arrowood, C. R. Caffrey. “A cysteine protease inhibitor rescues mice from a lethal Cryptosporidium parvum infection”, Antimicrobial Agents and Chemotherapy, 57 (2013) 6063-6073.  Online  PMC3837922

114.

S. Zhao, R. Kumar, A. Sakai, M. Vetting, B. M. Wood, S. Brown, P. C. Babbitt, S. C. Almo, J. V. Sweedler, J. A. Gerlt, J. E. Cronan, and M. P. Jacobson.  “Discovery of new enzymes and metabolic pathways using structure and genome context”, Nature, 502 (2013) 698-702.  Online  F1000  [News&Views:  M. J. Wargo, “Digging up enzyme functions“, Nature Chemical Biology (2013).]  [Discussed in PSI/Nature Knowledgbase]  PMC3966649

113.

B. Tian, F. Wallrapp, C. Kalyanaraman, S. Zhao, L. A. Eriksson, and M. P. Jacobson.  “Predicting Enzyme-Substrate Specificity with QM/MM Methods: A Case Study of the Stereo-specificity of D-glucarate Dehydratase”.  Biochemistry, 52 (2013) 5511-5513.  Online  PMC3964877

112.

C.-H. Choi, B. A. Webb, M. Chimenti, M. P. Jacobson, and D. L. Barber.  “pH sensing by FAK-His58 regulates focal adhesion remodeling”, J. Cell. Biol., 202 (2013) 849-859.  [Commentary:  C. Lawson and D. D. Schlaepfer, “pHocal adhesion kinase regulation is on a FERM foundation”, J. Cell. Biol., 202 (2013) 833-836.]  [Commentary:  K. Legg, “Factoring pH into FAK phosphorylation”, Cell Migration Gateway.]  [F1000PMC3776353

108.

D. Datta, C. L. McClendon, M. P. Jacobson, and J. A. Wells.  “Substrate and inhibitor-induced dimerization and cooperativity in caspase-1 but not caspase-3”, Journal of Biological Chemistry, 288 (2013) 9971-9981.  PMC3617296

105.

J. W. Choy, C. Bryant, C. M. Calvet, P. S. Doyle, S. S. Gunatilleke, S. S. F. Leung, K. K. H. Ang, S. Chen, J. Gut, J. A. Oses-Prieto, J. B. Johnston, M. R. Arkin, A. L. Burlingame, J. Taunton, M. P. Jacobson, J. M. McKerrow, L. M. Podust, and A. R. Renslo.  “Chemical-Biological Characterization of a Cruzain Inhibitor Reveals a Second Target and a Mammalian Off-Target”.  Beilstein J. Org. Chem, 9 (2013) 15-25.  PMC3566858

103.

B. M. Silber, S. Rao, K. L. Fife, A. Gallardo-Godoy, A. R. Renslo, D. K. Dalvie, K. Giles, Y. Freyman, M. Elepano, J. R. Gever, B. Lam, M. P. Jacobson, Y. Huang, L. Z. Benet, S. B. Prusiner.  “Pharmacokinetics and metabolism of 2-aminothiazoles with antiprion activity in mice”, Pharmaceutical Research, 30 (2013) 932-950.  PMC3640342

100.

A. C. Rand, S. S. F. Leung, H. Eng, C. J. Rotter, R. Sharma, A. S. Kalgutkar, Y. Zhang, M. V. Varma, K. Farley, C. Limberakis, A. M. Mathiowetz, D. A. Price, S. Liras, M. P. Jacobson and R. S. Lokey.  “Optimizing PK properties of cyclic peptides: the effect of side chain substitutions on permeability and clearance” (invited article).  MedChemComm, 3 (2012) 1282-1289.  Online  PMC3488302

93.

T. Lukk, A. Sakai, C. Kalyanaraman, S. Brown, H. J. Imker, L. Song, A. A. Fedorov, E. V. Fedorov, R. Toro, B. Hillerich, R. Seidel, Y. Patskovsky, M. W. Vetting, S. K. Nair, P. C. Babbitt, S. C. Almo, J. A. Gerlt, and M. P. Jacobson.  “Computational prediction of the diversity of enzyme specificity among dipeptide epimerases in the enolase superfamily”.  PNAS, 109 (2012) 4122-4127. [F1000] [Discussion in PSI/Nature Knowledgebase] [Chemical&Engineering News] PMC3306705

90.

J. A. Gerlt, K. N. Allen, S. C. Almo, R. N. Armstrong, P. C. Babbitt, J. E. Cronan, D. Dunaway-Mariano, H. J. Imker, M. P. Jacobson, W. Minor, C. D. Poulter, F. M. Raushel, A. Sali, B. K. Shoichet, and J. V. Sweedler.  “The Enzyme Function Initiative”, Biochemistry, 50 (2011) 9950-9962.  PMC3238057

88.

C. S. Rapp, C. Kalyanaraman, A. Schiffmiller, E. L. Schoenbrun, and M. P. Jacobson.  “A Molecular Mechanics Approach to Modeling Protein-Ligand Interactions:  Relative Binding Affinities in Congeneric Series”, Journal of Chemical Information and Modeling, 51 (2011) 2082-2089.  PMC3183355

87.

T. R. White, C. M. Renzelman, A. C. Rand, T. Rezai, C. M. McEwen, V. M. Gelev, R. A. Turner, A. C. Rand, R. G. Linington, S. S. F. Leung, A. S. Kalgutkar, J. N. Bauman, Y. Zhang, S. Liras, D. A. Price, A. M. Mathiowetz, M. P. Jacobson, and R. S. Lokey. “On-resin N-methylation of cyclic peptides for discovery of orally bioavailable scaffolds”, Nature Chemical Biology, 7 (2011) 810-817.  PMC3210067.  [Discussed in SciBX 4 (2011).]  F1000

80.

F. Morcos, S. Chatterjee, C. L. McClendon, P. R. Brenner, R. Lopez-Rendon, J. Zintsmaster, M. Ercsey-Ravasz, C. R. Sweet, M. P. Jacobson, J. W. Peng, and J. A. Izaguirre.  “Modeling the conformational ensembles of NMR relaxation dispersion: molecular dynamics study of slow functional motions in the Pin1-WW domain”.  PLoS Computational Biology, 6 (2010) e1001015.  PMC2996313

72.

C. L. McClendon, G. Friedland, D. L. Mobley, H. Amirkhani, and M. P. Jacobson.  “Quantifying Correlations Between Allosteric Sites in Thermodynamic Ensembles”, Journal of Chemical Theory and Computation, 5 (2009) 2486-2502.  PMC2790287

70.

J. F. Rakus, C. Kalyanaraman, A. A. Fedorov, Elena V. Fedorov, F. P. Mills-Groninger, K. Bain, J. M. Sauder, S. K. Burley, S. C. Almo, M. P. Jacobson, and J. A. Gerlt. “Computation Facilitated Assignment of Function in the Enolase Superfamily: A Regiochemically Distinct Galactarate Dehydratase from Oceanobacillus iheyensis”, Biochemistry, 48 (2009) 11546-58.  PMC2787699

65.

A. Narayanan, B. D. Sellers, and M. P. Jacobson.  “Energy-based analysis and prediction of the orientation of antibody heavy and light chain variable domains”, Journal of Molecular Biology, 388 (2009) 941–953.

64.

T. Schwede, A. Sali, B. Honig, M. Levitt, H. M. Berman, D. Jones, S. E. Brenner, S. K. Burley, R. Das, N. V. Dokholyan, R. L. Dunbrack Jr, K. Fidelis, A. Fiser, A. Godzik, C. Humblet, M. P. Jacobson, A. Joachimiak, S. R. Krystek Jr., T. Kortemme, A. Kryshtafovych, G. Montelione, J. Moult, D. Murray, R. Sanchez, T. R. Sosnick, D. M. Standley, T. Stouch, S. Vajda, M. Vasquez, J. D. Westbrook, and I. A. Wilson.  “Outcome of Workshop on Applications of Protein Models in Biomedical Research”, Structure, 13 (2009) 151–159.  PMC2739730

62.

U. Pieper, R. Chiang, J. J. Seffernick, S. D. Brown, M. E. Glasner, L. Kelly, N. Eswar, M. Sauder, S. K. Burley, S. Almo, J. A. Gerlt, F. Raushel, B. K. Shoichet, M. P. Jacobson, P. C. Babbitt, A. Sali.  “Target Selection and Annotation for the Structural Genomics of the Amidohydrolase and Enolase Superfamilies”, Journal of Structural and Functional Genomics, 10 (2009) 107–125.  PMC2693957

61.

C. Frantz, G. Barreiro, L. Dominguez, X. Chen, R. Eddy, J. Condeelis, M. J. S. Kelly, M. P. Jacobson and D. L. Barber.  “Cofilin is a pH Sensor for Actin Free Barbed End Formation”.  Journal of Cell Biology, 183 (2008) 865–879.  [“In this issue”:  “Cofilin activity is a total coincidence“, Journal of Cell Biology, 183 (2008) 753.]  Online  PMC2592832  F1000

60.

C. Kalyanaraman, H. J. Imker, A. A. Federov, E. V. Federov, M. E. Glasner, P. C. Babbitt, S. C. Almo, J. A. Gerlt, and M. P. Jacobson.  “Discovery of a new dipeptide epimerase enzymatic function guided by homology modeling and virtual screening”, Structure, 16 (2008) 1668–1677.  [Preview:  D. Dunaway-Mariano, “Enzyme Function Discovery“, 16 (2008) 1599–1600.]  Online  PMC2714228

59.

J. Srivastava, G. Barreiro, S. Groscurth, A. R. Gingras, B. T. Goult, D. R. Critchley, M. J. S. Kelly, M. P. Jacobson, and D. L. Barber.  “Structural model and functional significance of pH-dependent talin-actin binding for focal adhesion remodeling”.  PNAS, 105 (2008) 14436–14441.  Online  PMC2532973

52.

L. Song, C. Kalyanaraman, A. A. Fedorov, E. V. Fedorov, M. E. Glasner, S. Brown, P. C. Babbitt, S. C. Almo, M. P. Jacobson, and J. A. Gerlt.  “Assignment and Prediction of Function in the Enolase Superfamily:  A Divergent N-Succinyl Amino Acid Racemase from Bacillus cereus“, Nature Chemical Biology, 3 (2007) 486–491.  [News&Views:  K. N. Allen, “Form finds function“, Nature Chemical Biology, 3 (2007) 452–453.]   [NIGMS “Biomedical Beat“]  F1000  Online

50.

K. Zhu, M. R. Shirts, R. A. Friesner, and M. P. Jacobson.  “Multiscale Optimization of a Truncated Newton Minimization Algorithm and Applications to Proteins and Protein-Ligand Complexes”, Journal of Chemical Theory and Computation, 3 (2007) 640–648.  Online

45.

N. Huang, C. Kalyanaraman, K. Bernacki, and M. P. Jacobson.  “Molecular Mechanics Methods for Predicting Protein-Ligand Binding” (invited feature article), Physical Chemistry Chemical Physics, 8 (2006) 5166–5177.  [PCCP “hot paper”; top downloaded papers in 2006.]  Online

44.

X. Li, M. P. Jacobson, K. Zhu, S. Zhao, and R. A. Friesner.  “Assignment of Polar States for Protein Amino Acid Residues Using an Interaction Cluster Decomposition Algorithm and its Application to High Resolution Protein Structure Modeling”, Proteins, 66 (2007) 824–837.  Online  Pubmed

39.

W. Sherman, T. Day, M. P. Jacobson, R. A. Friesner, and R. Farid. “Novel Procedure for Modeling Ligand/Receptor Induced Fit Effects”, Journal of Medicinal Chemistry, 49 (2006) 534–553.  [#3 most cited article in J Med Chem in 2006]  Online

38.

N. Huang, C. Kalyanaraman, J. J. Irwin, and M. P. Jacobson.  “Physics-Based Scoring of Protein-Ligand Complexes:  Enrichment of Known Inhibitors in Large-Scale Virtual Screening”, Journal of Chemical Information and Modeling, 46 (2006) 243–253.  Online

37.

Z. Yu, M. P. Jacobson, and R. A. Friesner.  “What role do surfaces play in GB models? A new generation of surface-generalized Born model based on a novel Gaussian surface for biomolecules”, Journal of Computational Chemistry, 27 (2006) 72–89.  Online  PMC2743414

35.

K. Bernacki, C. Kalyanaraman, and M. P. Jacobson.  “Virtual ligand Screening against E. coli Dihydrofolate Reductase:  Improving Docking Enrichment Using Physics-Based Methods” (invited paper), Journal of Biomolecular Screening, 10 (2005) 675–681.  Online

34.

S. Wong, K. Bernacki, and M. P. Jacobson. “Competition Between Intramolecular Hydrogen Bonds and Solvation in Phosphorylated Peptides: Simulations with Implicit and Explicit Solvent”, Journal of Physical Chemistry B, 109 (2005) 5249–5258.  Online

33.

C. Kalyanaraman, K. Bernacki, and M. P. Jacobson. “Virtual screening against highly charged active sites: Identifying substrates of alpha-beta barrel enzymes”, Biochemistry, 44 (2005) 2059–2071.  [One of top 20 most accessed articles in Biochemistry in 2005.]  Online

32.

V. C. Ruddat, R. Mogul, I. Chorny, C. Chen, N. Perrin, S. Whitman, V. Kenyon, M. P. Jacobson, C. F. Bernasconi, and T. R. Holman. “Tryptophan 500 and Arginine 707 Define Product and Substrate Active Site Binding in Soybean Lipoxygenase-1”, Biochemistry, 43 (2004) 13063–13071.  Online

31.

Z. Yu, M. P. Jacobson, C. S. Rapp, and R. A. Friesner.  “First-Shell Solvation of Ion Pairs:  Correction of Systematic Errors in Implicit Solvent Models”.  Journal of Physical Chemistry B, 108 (2004) 6643–6654.  Online

29.

V. Guallar, M. P. Jacobson, A. McDermott, and R. A. Friesner. “Computational Modeling of the Catalytic Reaction in Triose Phosphate Isomerase”, Journal of Molecular Biology, 337 (2004) 227–239.

26.

M. Andrec, Y. Harano, M. P. Jacobson, R. A. Friesner, and R. M. Levy. “Complete Protein Structure Determination Using Backbone Residual Dipolar Couplings and Sidechain Rotamer Prediction”, Journal of Structural and Functional Genomics, 2 (2002) 103–111.

23.

M. L. Silva, M. P. Jacobson, Z. Duan, and R. W. Field. “Unexpected Simplicity in the S1S0 Dispersed Fluorescence Spectrum of 13C2H2“, Journal of Chemical Physics, 106 (2002) 7939–7947.

22.

M. S. Child, M. P. Jacobson, and C. D. Cooper. “Scaling Laws for Strongly Anharmonic Vibrational Matrix Elements”, Journal of Physical Chemistry A, 105 (2001) 10791–10799.

21.

M. L. Silva, M. P. Jacobson, Z. Duan, and R. W. Field. “Anomalous Simplicity of the A → X Dispersed Fluorescence Spectrum of 13C2H2“, Journal of Molecular Structure, 565–566 (2001) 87–91.

20.

K. Hoshina, A. Iwasaki, K. Yamanouchi, M. P. Jacobson, and R. W. Field. “High Resolution IR-UV Dispersed Fluorescence Spectrum of Acetylene: New Classes of Bright States”, Journal of Chemical Physics, 114 (2001) 7424–7442.

19.

M. P. Jacobson and M. S. Child. “Resonant Vibrational Dynamics at a Saddle Point: Scaling Rules for a Zeroth Order Pendulum Model”, Journal of Physical Chemistry A, 105 (2001) 2834–2841.

18.

C. Jung, H. S. Taylor, and M. P. Jacobson. “The Acetylene Bending Spectrum at ~10,000 cm-1: Quantum Assignments in the Midst of Classical Chaos”, Journal of Physical Chemistry A, 105 (2001) 681–693.

17.

M. P. Jacobson and M. S. Child. “Spectroscopic Signatures of Bond-Breaking Internal Rotation. II. Quantum Monodromy and Coriolis Coupling in HCP”, Journal of Chemical Physics, 114 (2001) 262–275.

16.

M. P. Jacobson and M. S. Child. “Spectroscopic Signatures of Bond-Breaking Internal Rotation. I. Saddle Point Induced Polyad Breaking”, Journal of Chemical Physics, 114 (2001) 250–261.

15.

A. F. Ruckstuhl, M. P. Jacobson, R. W. Field, and J. A. Dodd.  “Baseline Subtraction using Local Robust Regression Estimation”, Journal of Quantitative Spectroscopy and Radiative Transfer, 68 (2001) 179–193.

13.

M. P. Jacobson and R. W. Field.  “Acetylene at the Threshold of Isomerization” (Feature Article), Journal of Physical Chemistry A, 104 (2000) 3073–3086.

12.

D. B. Moss, Z.-C. Duan, M. P. Jacobson, J. P. O’Brien, and R. W. Field. “Observation of Coriolis Coupling Between ν2+4ν4 and 7ν4 in Acetylene X1Σg+ by Stimulated Emission Pumping”, Journal of Molecular Spectroscopy, 199 (2000) 265–274.

11.

M. P. Jacobson, S. L. Coy, R. W. Field, S. J. Lipson, R. B. Lockwood, P. S. Armstrong, D. L. Vititoe, and W. A. M. Blumberg, “Pattern Recognition Analysis of CO Atmospheric Simulation Experiments”, Journal of Physical Chemistry A, 104 (2000) 249–257. [Winner of the Air Force Research Laboratory, Space Vehicles Directorate “Team Publication of the Year Award” for the year 2000.]

10.

M. P. Jacobson, C. Jung, H. S. Taylor, and R. W. Field, “State-by-State Assignment of the Bending Spectrum of Acetylene at 15000 cm-1: A Case Study of Quantum-Classical Correspondence”, Journal of Chemical Physics, 111 (1999) 600–618.

9.

E. R. Jamieson, M. P. Jacobson, C. S. Chow, C. M. Barnes, and S. J. Lippard. “Fluorescence Resonance Energy Transfer Study of the Interaction of HMG1 Domain B with Cisplatin-Modified DNA”, Journal of Biological Chemistry, 274 (1999) 12346–12354.

8.

M. P. Jacobson, R. J. Silbey, and R. W. Field. “Local Mode Behavior in the Acetylene Bending System”, Journal of Chemical Physics, 110 (1999) 845–859.

7.

M. P. Jacobson, J. P. O’Brien, and R. W. Field.  “Anomalously Slow Intramolecular Vibrational Redistribution in the Acetylene X State Above 10,000 cm-1 of Internal Energy”, Journal of Chemical Physics, 109 (1998) 3831–3840.

6.

M. P. Jacobson, J. P. O’Brien, R. J. Silbey, and R. W. Field. “Pure Bending Dynamics in the Acetylene X State up to 15,000 cm-1 of Internal Energy”, Journal of Chemical Physics, 109 (1998) 121–133.

5.

J. P. O’Brien, M. P. Jacobson, J. J. Sokol, S. L. Coy, and R. W. Field.  “Numerical Pattern Recognition in Acetylene Dispersed Fluorescence Spectra”, Journal of Chemical Physics, 108 (1998) 7100–7113.

4.

S. L. Coy, M. P. Jacobson, and R. W. Field. “Identifying Patterns in Multicomponent Signals by Extended Cross Correlation”, Journal of Chemical Physics, 107 (1997) 8357–8369.