143.

K. A. Ball, J. R. Johnson, M. K. Lewinski, J. Guatelli, E. Verschueren, N. J. Krogan, and M. P. Jacobson.  “Non-degradative Ubiquitination of Protein Kinases”, PLoS Computational Biology, 12 (2016) e1004898.  PMC4890936

118.

M. J. Rardin, W. He, Y. Nishida, J. C. Newman, C. Carrico, S. R. Danielson, A. Guo, P. Gut, A. K. Sahu, B. Li, R. Uppala, M. Fitch, T. Riiff, L. Zhu, J. Zhou, D. Mulhern, R. D. Stevens, O. R. Ilkayeva, C. B. Newgard, M. P. Jacobson, M. Hellerstein, E. S. Goetzman, B. W. Gibson, E. Verdin.  “SIRT5 regulates the mitochondrial lysine succinylome and metabolic networks”, Cell Metabolism, 18 (2013) 920-933.  Online  PMC4105152

104.

A. Schonichen, B. A. Webb, M. P. Jacobson, and D. L. Barber.  “Considering Protonation as a Post-translational Modification Regulating Protein Structure and Function”, Annual Reviews of Biophysics, 42 (2013) 289-314.  Eprint  PMC4041481

102.

C. A. Smith, C. A. Shi, M. K. Chroust, T. E. Bliska, M. J. S. Kelly, M. P. Jacobson, and T. Kortemme.  “Design of a Phosphorylatable PDZ Domain with Peptide-Specific Affinity Changes”, Structure, 21 (2013) 54-64.  Online

97.

C. L. McClendon, L. Hua, G. Barreiro, and M. P. Jacobson.  “Comparing Conformational Ensembles Using the Kullback-Leibler Divergence Expansion”, Journal of Chemical Theory and Computation, 8 (2012) 2115-2126.  Online  Simtk  PMC3538811

96.

P. Kumar, M. Chimenti, H. Pemble, O. Thompson, M. P. Jacobson, and T. Wittmann.  “Multisite phosphorylation modulates CLASP-EB1 interactions by disrupting arginine-glutamate salt bridge networks”, Journal of Biological Chemistry, 287 (2012) 17050-17064.  Online  F1000  PMC3366819

89.

A. Narayanan, L. L. LeClaire, D. L. Barber, and M. P. Jacobson.  “Phosphorylation of the Arp2 Subunit Relieves Auto-inhibitory Interactions for Arp2/3 Complex Activation”.  PLoS Computational Biology, 7 (2011) e1002226.  PMC3220268

79.

T. Shimazu, M. D. Hirschey, L. Hua, B. Schwer, D. B. Lombard, Y. Li, J. Bunkenborg, F. W. Alt, M. P. Jacobson, and E. Verdin.  “SIRT3 Deacetylates Mitochondrial 3-Hydroxy-3-Methylglutaryl CoA Synthase 2, Increases its Enzymatic Activity and Regulates Ketone Body Production”.  Cell Metabolism, 12 (2010) 654-661.  Online  PMC3310379

66.

A. Narayanan and M. P. Jacobson.  “Computational studies of protein regulation by post-translational phosphorylation”, Current Opinion in Structural Biology, 19 (2009) 156–163.

61.

C. Frantz, G. Barreiro, L. Dominguez, X. Chen, R. Eddy, J. Condeelis, M. J. S. Kelly, M. P. Jacobson and D. L. Barber.  “Cofilin is a pH Sensor for Actin Free Barbed End Formation”.  Journal of Cell Biology, 183 (2008) 865–879.  [“In this issue”:  “Cofilin activity is a total coincidence“, Journal of Cell Biology, 183 (2008) 753.]  Online  PMC2592832  F1000

48.

D. J. Mandell, I. Chorny, E. S. Groban, S. Wong, E. Levine, C. S. Rapp, and M. P. Jacobson.  “The Strengths of Hydrogen Bonds Involving Phosphorylated Amino Acid Side Chains”, JACS, 129 (2007) 820–827.  Online

42.

E. S. Groban, A. Narayanan, and M. P. Jacobson. “Conformational Changes in Protein Loops and Helices Induced by Post-Translational Phosphorylation”, PLOS Computational Biology, 2 (2006) 238–250.  Online  PMC1440919

34.

S. Wong, K. Bernacki, and M. P. Jacobson. “Competition Between Intramolecular Hydrogen Bonds and Solvation in Phosphorylated Peptides: Simulations with Implicit and Explicit Solvent”, Journal of Physical Chemistry B, 109 (2005) 5249–5258.  Online