143.

K. A. Ball, J. R. Johnson, M. K. Lewinski, J. Guatelli, E. Verschueren, N. J. Krogan, and M. P. Jacobson.  “Non-degradative Ubiquitination of Protein Kinases”, PLoS Computational Biology, 12 (2016) e1004898.  PMC4890936

120.

L. X. Peng*, M. T. Hsu*, M. Bonomi, D. A. Agard, and M. P. Jacobson.  “The free energy profile of tubulin straight-bent conformational changes, with implications for microtubule assembly and drug discovery”, PLoS Computational Biology, 10 (2014) e1003464.  (* Joint first authors)  Open Access  PMC3916224

112.

C.-H. Choi, B. A. Webb, M. Chimenti, M. P. Jacobson, and D. L. Barber.  “pH sensing by FAK-His58 regulates focal adhesion remodeling”, J. Cell. Biol., 202 (2013) 849-859.  [Commentary:  C. Lawson and D. D. Schlaepfer, “pHocal adhesion kinase regulation is on a FERM foundation”, J. Cell. Biol., 202 (2013) 833-836.]  [Commentary:  K. Legg, “Factoring pH into FAK phosphorylation”, Cell Migration Gateway.]  [F1000]  PMC3776353

111.

R. A. Aglietti, S. N. Floor, C. L. McClendon, M. P. Jacobson and J. D. Gross.  “Active site conformational dynamics are coupled to catalysis in the mRNA decapping enzyme Dcp2”, Structure, 21 (2013) 1571-1580.  Online  PMC3769517

97.

C. L. McClendon, L. Hua, G. Barreiro, and M. P. Jacobson.  “Comparing Conformational Ensembles Using the Kullback-Leibler Divergence Expansion”, Journal of Chemical Theory and Computation, 8 (2012) 2115-2126.  Online  Simtk  PMC3538811

96.

P. Kumar, M. Chimenti, H. Pemble, O. Thompson, M. P. Jacobson, and T. Wittmann.  “Multisite phosphorylation modulates CLASP-EB1 interactions by disrupting arginine-glutamate salt bridge networks”, Journal of Biological Chemistry, 287 (2012) 17050-17064.  Online  F1000  PMC3366819

89.

A. Narayanan, L. L. LeClaire, D. L. Barber, and M. P. Jacobson.  “Phosphorylation of the Arp2 Subunit Relieves Auto-inhibitory Interactions for Arp2/3 Complex Activation”.  PLoS Computational Biology, 7 (2011) e1002226.  PMC3220268

84.

B. C. Cossins, M. P. Jacobson, and V. Guallar.  “A new view of the bacterial cytosol environment.”  PLoS Computational Biology, 7 (2011) e1002066.  PMC3111478

81.

S. Wong, B. D. Sellers, and M. P. Jacobson.  “Effects of Somatic Mutations on CDR Loop Flexibility During Affinity Maturation”, Proteins, 79 (2011) 821-829.  Online

80.

F. Morcos, S. Chatterjee, C. L. McClendon, P. R. Brenner, R. Lopez-Rendon, J. Zintsmaster, M. Ercsey-Ravasz, C. R. Sweet, M. P. Jacobson, J. W. Peng, and J. A. Izaguirre.  “Modeling the conformational ensembles of NMR relaxation dispersion: molecular dynamics study of slow functional motions in the Pin1-WW domain”.  PLoS Computational Biology, 6 (2010) e1001015.  PMC2996313

79.

T. Shimazu, M. D. Hirschey, L. Hua, B. Schwer, D. B. Lombard, Y. Li, J. Bunkenborg, F. W. Alt, M. P. Jacobson, and E. Verdin.  “SIRT3 Deacetylates Mitochondrial 3-Hydroxy-3-Methylglutaryl CoA Synthase 2, Increases its Enzymatic Activity and Regulates Ketone Body Production”.  Cell Metabolism, 12 (2010) 654-661.  Online  PMC3310379

72.

C. L. McClendon, G. Friedland, D. L. Mobley, H. Amirkhani, and M. P. Jacobson.  “Quantifying Correlations Between Allosteric Sites in Thermodynamic Ensembles”, Journal of Chemical Theory and Computation, 5 (2009) 2486-2502.  PMC2790287

66.

A. Narayanan and M. P. Jacobson.  “Computational studies of protein regulation by post-translational phosphorylation”, Current Opinion in Structural Biology, 19 (2009) 156–163.

61.

C. Frantz, G. Barreiro, L. Dominguez, X. Chen, R. Eddy, J. Condeelis, M. J. S. Kelly, M. P. Jacobson and D. L. Barber.  “Cofilin is a pH Sensor for Actin Free Barbed End Formation”.  Journal of Cell Biology, 183 (2008) 865–879.  [“In this issue”:  “Cofilin activity is a total coincidence“, Journal of Cell Biology, 183 (2008) 753.]  Online  PMC2592832  F1000

59.

J. Srivastava, G. Barreiro, S. Groscurth, A. R. Gingras, B. T. Goult, D. R. Critchley, M. J. S. Kelly, M. P. Jacobson, and D. L. Barber.  “Structural model and functional significance of pH-dependent talin-actin binding for focal adhesion remodeling”.  PNAS, 105 (2008) 14436–14441.  Online  PMC2532973

51.

N. Huang and M. P. Jacobson.  “New Physics-Based Methods for Studying Protein-Ligand Interactions”, Current Opinion in Drug Discovery & Development, 10 (2007) 325-331.

36.

I. Chorny, K. A. Dill, and M. P. Jacobson. “Surfaces Affect Ion Pairing”, Journal of Physical Chemistry B, 109 (2005) 24056–24060.  Online