129.

A. M. Mathiowetz, S. S. F. Leung, and M. P. Jacobson.  “Optimizing the permeability and oral bioavailability of macrocycles”, in Macrocycles in Drug Discovery (2015), 367-397.

127.

M. P. Jacobson, C. Kalyanaraman, S. Zhao, and B. Tian.  “Leveraging structure for enzyme function prediction: methods, opportunities and challenges”, Trends in Biochemical Sciences 39 (2014), 363-371.  Online  PMC4117707

104.

A. Schonichen, B. A. Webb, M. P. Jacobson, and D. L. Barber.  “Considering Protonation as a Post-translational Modification Regulating Protein Structure and Function”, Annual Reviews of Biophysics, 42 (2013) 289-314.  Eprint  PMC4041481

99.

D. Kuroda, H. Shirai, M. P. Jacobson, and H. Nakamura.  “Computer-aided antibody design”, Protein Engineering Design Selection, 25 (2012) 507-522.  Open Access PMC3449398

92.

J. A. Gerlt, P. C. Babbitt, M. P. Jacobson, and S. C. Almo.  “Divergent evolution in the enolase superfamily: Strategies for assigning functions” (mini-review).  Journal of Biological Chemistry, 287 (2012) 29-34.  PMC3249080

90.

J. A. Gerlt, K. N. Allen, S. C. Almo, R. N. Armstrong, P. C. Babbitt, J. E. Cronan, D. Dunaway-Mariano, H. J. Imker, M. P. Jacobson, W. Minor, C. D. Poulter, F. M. Raushel, A. Sali, B. K. Shoichet, and J. V. Sweedler.  “The Enzyme Function Initiative”, Biochemistry, 50 (2011) 9950-9962.  PMC3238057

86.

B. A. Webb, M. Chimenti, M. P. Jacobson, and D. L. Barber.  “Dysregulated pH:  A perfect storm for cancer progression” (invited article).  Nature Reviews Cancer, 11 (2011) 671-677.  Online

66.

A. Narayanan and M. P. Jacobson.  “Computational studies of protein regulation by post-translational phosphorylation”, Current Opinion in Structural Biology, 19 (2009) 156–163.

64.

T. Schwede, A. Sali, B. Honig, M. Levitt, H. M. Berman, D. Jones, S. E. Brenner, S. K. Burley, R. Das, N. V. Dokholyan, R. L. Dunbrack Jr, K. Fidelis, A. Fiser, A. Godzik, C. Humblet, M. P. Jacobson, A. Joachimiak, S. R. Krystek Jr., T. Kortemme, A. Kryshtafovych, G. Montelione, J. Moult, D. Murray, R. Sanchez, T. R. Sosnick, D. M. Standley, T. Stouch, S. Vajda, M. Vasquez, J. D. Westbrook, and I. A. Wilson.  “Outcome of Workshop on Applications of Protein Models in Biomedical Research”, Structure, 13 (2009) 151–159.  PMC2739730

51.

N. Huang and M. P. Jacobson.  “New Physics-Based Methods for Studying Protein-Ligand Interactions”, Current Opinion in Drug Discovery & Development, 10 (2007) 325-331.

49.

J. Srivastava, D. L. Barber, and M. P. Jacobson.  “Regulation of Cell Processes by pH” (invited article), Physiology, 22 (2007) 30–39.  Online